RNA-seq(R, DESeq2)

RNA-Seq: DESeq2

library("DESeq2")
library(ggplot2)


dds <- DESeqDataSetFromMatrix(countData = countData,
                              colData = metaData,
                              design=~dex, tidy = TRUE)
dds <- DESeq(dds)
res <- results(dds)
head(results(dds, tidy=TRUE))

summary(res)

res <- res[order(res$padj),]
head(res)

workflow

Reference: Analyzing RNA-seq data with DESeq2 (bioconductor.org)

Analyzing RNA-seq data with DESeq2